Index

B

bisect_right() (in module genome_kmers.sequence_collection)

C

compare_sba_kmers_always_less_than() (in module genome_kmers.kmers)

compare_sba_kmers_lexicographically() (in module genome_kmers.kmers) crispr_ngg_pam_filter() (in module genome_kmers.kmers)

G

gen_kmer_gc_content_filter_func() (in module genome_kmers.kmers) gen_kmer_homopolymer_filter_func() (in module genome_kmers.kmers) gen_kmer_length_filter_func() (in module genome_kmers.kmers) gen_no_ambiguous_bases_filter() (in module genome_kmers.kmers) generate_get_kmer_info_func() (genome_kmers.kmers.Kmers method) generate_get_record_info_from_sba_index_func() (genome_kmers.sequence_collection.SequenceCollection method) genome_kmers.kmers module genome_kmers.sequence_collection module get_compare_sba_kmers_func() (in module genome_kmers.kmers) get_forward_seq_idx() (in module genome_kmers.sequence_collection) get_is_less_than_func() (genome_kmers.kmers.Kmers method)

get_kmer_count() (genome_kmers.kmers.Kmers method) get_kmer_group_counts() (genome_kmers.kmers.Kmers method) get_kmer_group_size_hist() (in module genome_kmers.kmers) get_kmer_info_group_size_only() (in module genome_kmers.kmers) get_kmer_info_minimal() (in module genome_kmers.kmers) get_kmer_str() (genome_kmers.kmers.Kmers method) get_kmer_str_no_checks() (genome_kmers.kmers.Kmers method) get_kmers() (genome_kmers.kmers.Kmers method) get_record_loc_from_sba_index() (genome_kmers.sequence_collection.SequenceCollection method) get_record_name_from_sba_index() (genome_kmers.sequence_collection.SequenceCollection method) get_sba_start_end_indices_for_segment() (genome_kmers.sequence_collection.SequenceCollection method) (in module genome_kmers.sequence_collection) get_segment_num_from_sba_index() (genome_kmers.sequence_collection.SequenceCollection method) (in module genome_kmers.sequence_collection)

I

iter_records() (genome_kmers.sequence_collection.SequenceCollection method)

K

kmer_filter_keep_all() (in module genome_kmers.kmers) kmer_has_required_len() (in module genome_kmers.kmers)

kmer_info_by_group_generator() (in module genome_kmers.kmers) Kmers (class in genome_kmers.kmers)

L

load() (genome_kmers.kmers.Kmers method) (genome_kmers.sequence_collection.SequenceCollection method)

M

module genome_kmers.kmers genome_kmers.sequence_collection

R

reverse_complement() (genome_kmers.sequence_collection.SequenceCollection method)

reverse_complement_sba() (in module genome_kmers.sequence_collection)

S

save() (genome_kmers.kmers.Kmers method) (genome_kmers.sequence_collection.SequenceCollection method) sequence_length() (genome_kmers.sequence_collection.SequenceCollection method)

SequenceCollection (class in genome_kmers.sequence_collection) sort() (genome_kmers.kmers.Kmers method) strands_loaded() (genome_kmers.sequence_collection.SequenceCollection method)

T

to_csv() (genome_kmers.kmers.Kmers method)